Luca DENTI

"I know that I know nothing" (Socrates)

Publications

  1. P. Khorsand*, L. Denti*, Human Genome Structural Variant Consortium, P. Bonizzoni, R. Chikhi, F. Hormozdiari
    Comparative genome analysis using sample-specific string detection in accurate long reads
    Bioinformatics Advances (2021)

  2. L. Denti*, Y. Pirola*, M. Previtali*, T. Ceccato, G. Della Vedova, R. Rizzi, P. Bonizzoni
    Shark: fishing relevant reads in an RNA-Seq sample
    Bioinformatics (2020)

  3. S. Ciccolella, G. Bernardini, P. Bonizzoni, M. Previtali, G. Della Vedova
    Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels
    Bioinformatics (2020)

  4. S. Ciccolella*, L. Denti*, P. Bonizzoni, G. Della Vedova, Y. Pirola*, and M. Previtali*
    MALVIRUS: an integrated web application for viral variant calling
    bioRxiv (2020)

  5. L. Denti*, M. Previtali*, G. Bernardini, A. Schönhuth, P. Bonizzoni
    MALVA: genotyping by Mapping-free ALlele detection of known VAriants
    Iscience (2019)

  6. S. Beretta, L. Denti, M. Previtali
    Graph Theory and Definitions
    Encyclopedia of Bioinformatics and Computational Biology (2019)

  7. S. Beretta, L. Denti, M. Previtali
    Network Properties
    Encyclopedia of Bioinformatics and Computational Biology (2019)

  8. L. Denti, R. Rizzi, S. Beretta, G. Della Vedova, M. Previtali, P. Bonizzoni
    ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
    BMC Bioinformatics (2018)

  9. S. Beretta, P. Bonizzoni, L. Denti, M. Previtali, R. Rizzi
    Mapping RNA-seq data to a transcript graph via approximate pattern matching to a hypertext
    AlCoB (2017)


Talks

  1. Comparative genome analysis using sample-specific string detection in accurate long reads
    DSB2021 - Milano, Italy (virtual)

  2. Dynamic quasi-minimal perfect hash function for k-mers (work-in-progress talk)
    DSB2020 - Rennes, France

  3. MALVA: genotyping by Mapping-free ALlele detection of known VAriants
    BITS2019 - Palermo, Italy

  4. MALVA: genotyping by Mapping-free ALlele detection of known VAriants
    RECOMBSEQ2019 - Washington DC, USA

  5. Mapping RNA-seq data to a transcript graph via approximate pattern matching to a hypertext
    AlCoB2017 - Aveiro, Portugal


Posters

  1. MALVA: genotyping by Mapping-free ALlele detection of known VAriants
    RECOMB2019

  2. ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
    RECOMB2018 Best Poster Award