I’m currently a post-doc in Paola Bonizzoni’s lab (BIAS) at University of Milano-Bicocca.
My research focuses on developing heuristics and tools for the analysis of WGS data. In other words, I really enjoy programming and playing with any kind of sequencing data.
Education
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2020, Ph.D. in Computer Science from University of Milano - Bicocca.
Supervisors: Paola Bonizzoni, Raffaella Rizzi, and Marco Previtali -
2016, M.Sc. in Computer Science from University of Milano - Bicocca
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2014, B.S. in Computer Science from University of Milano - Bicocca
Software
- SVDSS, a tool for calling SVs from PacBio HiFi data
- pantas, a tool for quantifying AS events from spliced pangenome graphs
- ESGq, a tool for quantifying annotated AS events using event splicing graphs
- MALVA, a tool for genotyping freshly-sequenced individuals
- Shark, a tool for filtering RNA-Seq samples
- MALVIRUS, a pipeline for genotyping freshly-sequenced viral strains
- ASGAL, a tool for detecting Alternative Splicing events by mapping RNA-Seq reads to splicing graphs